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Introduction
First Steps
Loading a Model
Workbench Panel

The Species Tab

The Parameters Tab
The Parameter Sets Tab
The Data Browser Tab
The Sensitivity Tab
The Fit Tab
Running a Data Fit
Data Fit Result Window
Plotting the Data Fit
Sensitivity Analysis
Sensitivity Analysis Result Window
Links

The second tab Species displays the species defined in the SBML model file, as well as their attributes (e.g. ID, Name,...).
See the SBML Specification for further information about the species tag.
This tab offers two buttons called Initialize Thresholds and Simulate at the bottom. The first button sets the species attribute Threshold to machine epsilon (roundoff). Note, this will issue a warning stating the set values might be inappropriate for parameter estimation.
However, the threshold values MUST be set prior to parameter estimation or sensitivity analysis (see BioPARKIN Manual).
The second button starts a simulation of the given model with the selected parameter set and initial value (see BioPARKIN Manual).

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