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Introduction
First Steps
Loading a Model
Workbench Panel
The Species Tab
The Parameters Tab
The Parameter Sets Tab
The Data Browser Tab
The Sensitivity Tab
The Fit Tab
Running a Data Fit
Data Fit Result Window

Plotting the Data Fit

Sensitivity Analysis
Sensitivity Analysis Result Window
Links

To run a simulation simply click on the Simulate button either in the Species or Parameter tab. To include the data points from the data file, either check the Include Experimental Data in Simulation in the Settings tab or in the Data Browser tab. The plot is placed in the same output window as the parameter estimation table. The user can switch the different result tabs.
Using the initial parameter set for simulation, the result window would look like (see right picture). Note, that the data points and solution trajectories do not coincide (balls vs. solid line).
If the estimated parameter set is used the plot the data points and the trajectories (depending on the quality of the estimation, i.e. the RMSD) coincide. The user has the option to save the trajectory data as well as the plot to some output file.

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